HL_7QVP_200
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7QVP|1|S2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_200 not in the Motif Atlas
- Geometric match to HL_4V88_212
- Geometric discrepancy: 0.1092
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S2|G|1245
7QVP|1|S2|A|1246
7QVP|1|S2|C|1247
7QVP|1|S2|U|1248
7QVP|1|S2|C|1249
7QVP|1|S2|A|1250
7QVP|1|S2|A|1251
7QVP|1|S2|C|1252
7QVP|1|S2|A|1253
7QVP|1|S2|C|1254
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain B4
- Transfer RNA; tRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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