HL_7QVP_231
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7QVP|1|S3|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_231 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.1729
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7QVP|1|S3|G|1054
7QVP|1|S3|A|1055
7QVP|1|S3|U|1056
7QVP|1|S3|C|1057
7QVP|1|S3|A|1058
7QVP|1|S3|G|1059
7QVP|1|S3|A|1060
7QVP|1|S3|U|1061
7QVP|1|S3|A|1062
7QVP|1|S3|C|1063
7QVP|1|S3|C|1064
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain A5
- mRNA
- Chain B5
- Transfer RNA; tRNA
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain RO
- 40S ribosomal protein S14
- Chain Ra
- 40S ribosomal protein S26
Coloring options: