HL_7QVP_238

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7QVP|1|S3|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_238 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1664

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7QVP|1|S3|G|1366
7QVP|1|S3|U|1367
7QVP|1|S3|U|1368
7QVP|1|S3|A|1369
7QVP|1|S3|A|1370
7QVP|1|S3|U|1371
7QVP|1|S3|U|1372
7QVP|1|S3|C|1373

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RR

40S ribosomal protein S17