HL_7SYV_020

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7SYV|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_020 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.2591

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7SYV|1|2|G|1054
7SYV|1|2|A|1055
7SYV|1|2|U|1056
7SYV|1|2|C|1057
7SYV|1|2|A|1058
7SYV|1|2|G|1059
7SYV|1|2|A|1060
7SYV|1|2|U|1061
7SYV|1|2|A|1062
7SYV|1|2|C|1063
7SYV|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain i

Transfer RNA; tRNA

Chain z

Internal ribosome entry site; IRES