HL_7SYV_025

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYV|1|2|U|1300, 7SYV|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_025 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.5847

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7SYV|1|2|A|1295
7SYV|1|2|U|1296
7SYV|1|2|U|1297
7SYV|1|2|G|1298
7SYV|1|2|A|1299
7SYV|1|2|U|1300
7SYV|1|2|A|1301
7SYV|1|2|G|1302
7SYV|1|2|C|1303
7SYV|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a