HL_7TOQ_021
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_021 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.2753
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7TOQ|1|A18S|G|1054
7TOQ|1|A18S|A|1055
7TOQ|1|A18S|U|1056
7TOQ|1|A18S|C|1057
7TOQ|1|A18S|A|1058
7TOQ|1|A18S|G|1059
7TOQ|1|A18S|A|1060
7TOQ|1|A18S|U|1061
7TOQ|1|A18S|A|1062
7TOQ|1|A18S|C|1063
7TOQ|1|A18S|C|1064
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS14
- 40S ribosomal protein S14
- Chain AS26
- eS26
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
- Chain PTRN
- Transfer RNA; tRNA
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