HL_7TOQ_057
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 7TOQ|1|A25S|U|1596, 7TOQ|1|A25S|A|1600, 7TOQ|1|A25S|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_057 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1032
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7TOQ|1|A25S|A|1593
7TOQ|1|A25S|C|1594
7TOQ|1|A25S|G|1595
7TOQ|1|A25S|U|1596
7TOQ|1|A25S|G|1597
7TOQ|1|A25S|C|1598
7TOQ|1|A25S|A|1599
7TOQ|1|A25S|A|1600
7TOQ|1|A25S|A|1601
7TOQ|1|A25S|U|1602
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL03
- 60S ribosomal protein L3
- Chain AL17
- 60S ribosomal protein L17
- Chain AL37
- 60S ribosomal protein L37
- Chain PR
- PR20, ALS/FTD dipeptide repeat protein
Coloring options: