HL_7TOQ_083
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 7TOQ|1|A25S|A|3642, 7TOQ|1|A25S|A|3643, 7TOQ|1|A25S|U|3644, 7TOQ|1|A25S|U|3645, 7TOQ|1|A25S|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_083 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1857
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
7TOQ|1|A25S|U|3639
7TOQ|1|A25S|U|3640
7TOQ|1|A25S|U|3641
7TOQ|1|A25S|A|3642
7TOQ|1|A25S|A|3643
7TOQ|1|A25S|U|3644
7TOQ|1|A25S|U|3645
7TOQ|1|A25S|A|3646
7TOQ|1|A25S|A|3647
7TOQ|1|A25S|A|3648
7TOQ|1|A25S|A|3649
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL02
- uL2
- Chain AL37
- 60S ribosomal protein L37
- Chain PR
- PR20, ALS/FTD dipeptide repeat protein
Coloring options: