HL_7TOQ_086
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 7TOQ|1|A25S|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOQ_086 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.2088
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7TOQ|1|A25S|G|3757
7TOQ|1|A25S|U|3758
7TOQ|1|A25S|A|3759
7TOQ|1|A25S|A|3760
7TOQ|1|A25S|C|3761
7TOQ|1|A25S|U|3762
7TOQ|1|A25S|A|3763
7TOQ|1|A25S|U|3764
7TOQ|1|A25S|G|3765
7TOQ|1|A25S|A|3766
7TOQ|1|A25S|C|3767
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
Coloring options: