HL_7TOQ_093

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7TOQ|1|A25S|A|4214, 7TOQ|1|A25S|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_093 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1021

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7TOQ|1|A25S|U|4210
7TOQ|1|A25S|C|4211
7TOQ|1|A25S|A|4212
7TOQ|1|A25S|A|4213
7TOQ|1|A25S|A|4214
7TOQ|1|A25S|C|4215
7TOQ|1|A25S|G|4216
7TOQ|1|A25S|G|4217
7TOQ|1|A25S|U|4218
7TOQ|1|A25S|A|4219
7TOQ|1|A25S|A|4220
7TOQ|1|A25S|C|4221
7TOQ|1|A25S|G|4222

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain AL29

eL29