HL_7TOQ_099

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7TOQ|1|A25S|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_099 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.201

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOQ|1|A25S|C|4417
7TOQ|1|A25S|G|4418
7TOQ|1|A25S|U|4419
7TOQ|1|A25S|U|4420
7TOQ|1|A25S|C|4421
7TOQ|1|A25S|A|4422
7TOQ|1|A25S|U|4423
7TOQ|1|A25S|A|4424
7TOQ|1|A25S|G|4425

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL40

eL40