HL_7TOQ_100

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOQ_100 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.099

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7TOQ|1|A25S|A|4474
7TOQ|1|A25S|G|4475
7TOQ|1|A25S|C|4476
7TOQ|1|A25S|A|4477
7TOQ|1|A25S|G|4478
7TOQ|1|A25S|A|4479
7TOQ|1|A25S|A|4480
7TOQ|1|A25S|U|4481

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL40

eL40