HL_7TOS_017

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7TOS|1|16S|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.1394

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7TOS|1|16S|G|786
7TOS|1|16S|A|787
7TOS|1|16S|U|788
7TOS|1|16S|U|789
7TOS|1|16S|A|790
7TOS|1|16S|G|791
7TOS|1|16S|A|792
7TOS|1|16S|U|793
7TOS|1|16S|A|794
7TOS|1|16S|C|795
7TOS|1|16S|C|796

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain S11

30S ribosomal protein S11

Chain S21

Ribosomal protein S21