HL_7TOS_072

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7TOS|1|23S|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOS_072 not in the Motif Atlas

Geometric match to HL_5J7L_174

Geometric discrepancy: 0.1367

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7TOS|1|23S|A|1630
7TOS|1|23S|G|1631
7TOS|1|23S|A|1632
7TOS|1|23S|G|1633
7TOS|1|23S|A|1634
7TOS|1|23S|A|1635
7TOS|1|23S|U|1636

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains