HL_7UPH_006

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7UPH|1|I|G|265

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2778

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|258
7UPH|1|I|G|259
7UPH|1|I|U|260
7UPH|1|I|A|261
7UPH|1|I|A|262
7UPH|1|I|C|263
7UPH|1|I|G|264
7UPH|1|I|G|265
7UPH|1|I|C|266

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16

Chain D

30S ribosomal protein S17

Chain G

30S ribosomal protein S20