HL_7UPH_017

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7UPH|1|I|U|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.2102

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7UPH|1|I|G|785
7UPH|1|I|A|786
7UPH|1|I|U|787
7UPH|1|I|U|788
7UPH|1|I|A|789
7UPH|1|I|G|790
7UPH|1|I|A|791
7UPH|1|I|U|792
7UPH|1|I|A|793
7UPH|1|I|C|794
7UPH|1|I|C|795

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain H

30S ribosomal protein S21

Chain f

30S ribosomal protein S11