3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
7UPH|1|I|G|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UPH_024 not in the Motif Atlas
Homologous match to HL_5J7L_024
Geometric discrepancy: 0.243
The information below is about HL_5J7L_024
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

7UPH|1|I|G|1088
7UPH|1|I|U|1089
7UPH|1|I|U|1090
7UPH|1|I|A|1091
7UPH|1|I|A|1092
7UPH|1|I|G|1093
7UPH|1|I|U|1094
7UPH|1|I|C|1095

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain W
30S ribosomal protein S2
Chain b
30S ribosomal protein S7

Coloring options:


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