HL_7UPH_035
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UPH_035 not in the Motif Atlas
- Geometric match to HL_5J7L_138
- Geometric discrepancy: 0.3008
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|U|1658
7UPH|1|I|G|1659
7UPH|1|I|A|1660
7UPH|1|I|A|1661
7UPH|1|I|U|1662
7UPH|1|I|C|1663
7UPH|1|I|C|1664
7UPH|1|I|A|1665
7UPH|1|I|U|1666
7UPH|1|I|A|1667
7UPH|1|I|G|1668
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain w
- 50S ribosomal protein L28
Coloring options: