3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
UGAAUCCAUAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7UPH_035 not in the Motif Atlas
Geometric match to HL_5J7L_138
Geometric discrepancy: 0.3008
The information below is about HL_5J7L_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68257.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7UPH|1|I|U|1658
7UPH|1|I|G|1659
7UPH|1|I|A|1660
7UPH|1|I|A|1661
7UPH|1|I|U|1662
7UPH|1|I|C|1663
7UPH|1|I|C|1664
7UPH|1|I|A|1665
7UPH|1|I|U|1666
7UPH|1|I|A|1667
7UPH|1|I|G|1668

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain w
50S ribosomal protein L28

Coloring options:


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