HL_7UPH_035

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_035 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.3008

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|U|1658
7UPH|1|I|G|1659
7UPH|1|I|A|1660
7UPH|1|I|A|1661
7UPH|1|I|U|1662
7UPH|1|I|C|1663
7UPH|1|I|C|1664
7UPH|1|I|A|1665
7UPH|1|I|U|1666
7UPH|1|I|A|1667
7UPH|1|I|G|1668

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain w

50S ribosomal protein L28