HL_7UPH_052
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 7UPH|1|I|A|2251, 7UPH|1|I|A|2252
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UPH_052 not in the Motif Atlas
- Geometric match to HL_5J7L_155
- Geometric discrepancy: 0.3096
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7UPH|1|I|U|2244
7UPH|1|I|1MG|2245
7UPH|1|I|PSU|2246
7UPH|1|I|5MU|2247
7UPH|1|I|G|2248
7UPH|1|I|A|2249
7UPH|1|I|A|2250
7UPH|1|I|A|2251
7UPH|1|I|A|2252
7UPH|1|I|A|2253
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L32
- Chain k
- 50S ribosomal protein L34
- Chain r
- 50S ribosomal protein L22
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