HL_7UPH_066

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|2947, 7UPH|1|I|C|2948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_066 not in the Motif Atlas

Geometric match to HL_5F9R_002

Geometric discrepancy: 0.2557

The information below is about HL_5F9R_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7UPH|1|I|C|2945
7UPH|1|I|G|2946
7UPH|1|I|A|2947
7UPH|1|I|C|2948
7UPH|1|I|G|2949
7UPH|1|I|G|2950
7UPH|1|I|U|2951
7UPH|1|I|U|2952
7UPH|1|I|G|2953

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain V

50S ribosomal protein L17