HL_7WTM_019

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7WTM|1|C2|U|830, 7WTM|1|C2|G|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_019 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3055

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTM|1|C2|A|829
7WTM|1|C2|U|830
7WTM|1|C2|U|831
7WTM|1|C2|U|832
7WTM|1|C2|U|833
7WTM|1|C2|G|834
7WTM|1|C2|U|835
7WTM|1|C2|U|836
7WTM|1|C2|G|837
7WTM|1|C2|G|838
7WTM|1|C2|U|839
7WTM|1|C2|U|840
7WTM|1|C2|U|841
7WTM|1|C2|C|842
7WTM|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A