HL_7WTM_023

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_023 not in the Motif Atlas

Geometric match to HL_4V88_209

Geometric discrepancy: 0.3888

The information below is about HL_4V88_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07372.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTM|1|C2|U|1055
7WTM|1|C2|U|1056
7WTM|1|C2|U|1057
7WTM|1|C2|U|1058
7WTM|1|C2|U|1059
7WTM|1|C2|U|1060
7WTM|1|C2|A|1061
7WTM|1|C2|A|1062
7WTM|1|C2|U|1063
7WTM|1|C2|G|1064

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain Sb

40S ribosomal protein S27-A