3D structure

PDB id
7WTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAUAGUGGC
Length
9 nucleotides
Bulged bases
7WTR|1|C2|G|337
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7WTR_008 not in the Motif Atlas
Geometric match to HL_4V88_193
Geometric discrepancy: 0.1225
The information below is about HL_4V88_193
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_82182.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

7WTR|1|C2|G|330
7WTR|1|C2|A|331
7WTR|1|C2|U|332
7WTR|1|C2|A|333
7WTR|1|C2|G|334
7WTR|1|C2|U|335
7WTR|1|C2|G|336
7WTR|1|C2|G|337
7WTR|1|C2|C|338

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SI
40S ribosomal protein S8-A
Chain SL
40S ribosomal protein S11-A

Coloring options:


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