HL_7WTR_019

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7WTR|1|C2|U|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTR_019 not in the Motif Atlas

Geometric match to HL_4V88_205

Geometric discrepancy: 0.3232

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTR|1|C2|A|829
7WTR|1|C2|U|830
7WTR|1|C2|U|831
7WTR|1|C2|U|832
7WTR|1|C2|U|833
7WTR|1|C2|G|834
7WTR|1|C2|U|835
7WTR|1|C2|U|836
7WTR|1|C2|G|837
7WTR|1|C2|G|838
7WTR|1|C2|U|839
7WTR|1|C2|U|840
7WTR|1|C2|U|841
7WTR|1|C2|C|842
7WTR|1|C2|U|843

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S11-A