HL_7XNY_023

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7XNY|1|L1|U|1596, 7XNY|1|L1|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_023 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0743

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|A|1593
7XNY|1|L1|C|1594
7XNY|1|L1|G|1595
7XNY|1|L1|U|1596
7XNY|1|L1|G|1597
7XNY|1|L1|C|1598
7XNY|1|L1|A|1599
7XNY|1|L1|A|1600
7XNY|1|L1|A|1601
7XNY|1|L1|U|1602

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37