HL_7XNY_027

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

7XNY|1|L1|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_027 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3511

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7XNY|1|L1|C|1816
7XNY|1|L1|U|1817
7XNY|1|L1|G|1818
7XNY|1|L1|G|1819
7XNY|1|L1|C|1820
7XNY|1|L1|G|1821
7XNY|1|L1|U|1822
7XNY|1|L1|G|1823

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29