HL_7XNY_044

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7XNY|1|L1|U|2707, 7XNY|1|L1|C|2709, 7XNY|1|L1|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_044 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3845

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|C|2704
7XNY|1|L1|G|2705
7XNY|1|L1|G|2706
7XNY|1|L1|U|2707
7XNY|1|L1|U|2708
7XNY|1|L1|C|2709
7XNY|1|L1|C|2710
7XNY|1|L1|G|2711
7XNY|1|L1|G|2712

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a