HL_7XNY_054

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

7XNY|1|L1|A|3760, 7XNY|1|L1|C|3761, 7XNY|1|L1|A|3763

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_054 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2585

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|G|3757
7XNY|1|L1|U|3758
7XNY|1|L1|A|3759
7XNY|1|L1|A|3760
7XNY|1|L1|C|3761
7XNY|1|L1|B8H|3762
7XNY|1|L1|A|3763
7XNY|1|L1|PSU|3764
7XNY|1|L1|G|3765
7XNY|1|L1|A|3766
7XNY|1|L1|C|3767

Current chains

Chain L1

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA