HL_7XNY_055

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7XNY|1|L1|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_055 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.065

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7XNY|1|L1|U|3796
7XNY|1|L1|C|3797
7XNY|1|L1|U|3798
7XNY|1|L1|A|3799
7XNY|1|L1|A|3800
7XNY|1|L1|U|3801
7XNY|1|L1|U|3802
7XNY|1|L1|A|3803
7XNY|1|L1|G|3804

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA