3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AUUGAUAGCU
Length
10 nucleotides
Bulged bases
7XNY|1|S2|U|1300, 7XNY|1|S2|G|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7XNY_109 not in the Motif Atlas
Homologous match to HL_4V88_213
Geometric discrepancy: 0.2279
The information below is about HL_4V88_213
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

7XNY|1|S2|A|1295
7XNY|1|S2|U|1296
7XNY|1|S2|U|1297
7XNY|1|S2|G|1298
7XNY|1|S2|A|1299
7XNY|1|S2|U|1300
7XNY|1|S2|A|1301
7XNY|1|S2|G|1302
7XNY|1|S2|C|1303
7XNY|1|S2|U|1304

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SP
40S ribosomal protein S15
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:


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