HL_7Z20_014

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

7Z20|1|b|G|386, 7Z20|1|b|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z20_014 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.0895

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7Z20|1|b|A|382
7Z20|1|b|C|383
7Z20|1|b|A|384
7Z20|1|b|C|385
7Z20|1|b|G|386
7Z20|1|b|U|387
7Z20|1|b|G|388
7Z20|1|b|G|389
7Z20|1|b|U|390
7Z20|1|b|A|391
7Z20|1|b|U|392

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28