HL_7Z34_058

3D structure

PDB id

7Z34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-60S particle bound to DRG1(AFG2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7Z34|1|1|A|2637, 7Z34|1|1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z34_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.2465

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7Z34|1|1|U|2633
7Z34|1|1|U|2634
7Z34|1|1|A|2635
7Z34|1|1|A|2636
7Z34|1|1|A|2637
7Z34|1|1|C|2638
7Z34|1|1|G|2639
7Z34|1|1|A|2640
7Z34|1|1|U|2641
7Z34|1|1|A|2642
7Z34|1|1|A|2643
7Z34|1|1|C|2644
7Z34|1|1|G|2645

Current chains

Chain 1

35S pre-ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L29