HL_7Z3O_077

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUGAUUC

Length

8 nucleotides

Bulged bases

7Z3O|1|2|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z3O_077 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1906

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7Z3O|1|2|G|240
7Z3O|1|2|G|241
7Z3O|1|2|U|242
7Z3O|1|2|G|243
7Z3O|1|2|A|244
7Z3O|1|2|U|245
7Z3O|1|2|U|246
7Z3O|1|2|C|247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SL

40S ribosomal protein S11-like protein