HL_7Z3O_090

3D structure

PDB id

7Z3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

7Z3O|1|2|U|831

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7Z3O_090 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1863

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7Z3O|1|2|A|827
7Z3O|1|2|U|828
7Z3O|1|2|U|829
7Z3O|1|2|U|830
7Z3O|1|2|U|831
7Z3O|1|2|G|832
7Z3O|1|2|U|833
7Z3O|1|2|U|834
7Z3O|1|2|G|835
7Z3O|1|2|G|836
7Z3O|1|2|U|837
7Z3O|1|2|U|838
7Z3O|1|2|U|839
7Z3O|1|2|C|840
7Z3O|1|2|U|841

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SL

40S ribosomal protein S11-like protein