HL_7ZJW_032

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7ZJW|1|L5|U|1551, 7ZJW|1|L5|A|1555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_032 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0912

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|A|1548
7ZJW|1|L5|C|1549
7ZJW|1|L5|G|1550
7ZJW|1|L5|U|1551
7ZJW|1|L5|G|1552
7ZJW|1|L5|C|1553
7ZJW|1|L5|A|1554
7ZJW|1|L5|A|1555
7ZJW|1|L5|A|1556
7ZJW|1|L5|U|1557

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LS

60S ribosomal protein uL22

Chain Lm

60S ribosomal protein L37