HL_7ZJW_033

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|A|1585, 7ZJW|1|L5|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_033 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1265

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|G|1582
7ZJW|1|L5|C|1583
7ZJW|1|L5|G|1584
7ZJW|1|L5|A|1585
7ZJW|1|L5|A|1586
7ZJW|1|L5|A|1587
7ZJW|1|L5|G|1588
7ZJW|1|L5|A|1589
7ZJW|1|L5|C|1590

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LQ

60S ribosomal protein L15

Chain Lm

60S ribosomal protein L37