HL_7ZJW_036

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|G|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_036 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3738

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZJW|1|L5|C|1755
7ZJW|1|L5|U|1756
7ZJW|1|L5|G|1757
7ZJW|1|L5|G|1758
7ZJW|1|L5|C|1759
7ZJW|1|L5|G|1760
7ZJW|1|L5|U|1761
7ZJW|1|L5|G|1762

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29