HL_7ZJW_040

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_040 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2415

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZJW|1|L5|U|1945
7ZJW|1|L5|G|1946
7ZJW|1|L5|U|1947
7ZJW|1|L5|A|1948
7ZJW|1|L5|A|1949
7ZJW|1|L5|C|1950
7ZJW|1|L5|A|1951
7ZJW|1|L5|A|1952

Current chains

Chain L5

28S rRNA

Nearby chains