HL_7ZJW_055

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|C|2637, 7ZJW|1|L5|G|2639, 7ZJW|1|L5|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_055 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.1061

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7ZJW|1|L5|C|2635
7ZJW|1|L5|G|2636
7ZJW|1|L5|C|2637
7ZJW|1|L5|A|2638
7ZJW|1|L5|G|2639
7ZJW|1|L5|C|2640
7ZJW|1|L5|A|2641
7ZJW|1|L5|G|2642

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LS

60S ribosomal protein uL22

Chain Lm

60S ribosomal protein L37

Chain Lo

60S ribosomal protein eL39