HL_7ZJW_063

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

7ZJW|1|L5|C|3493, 7ZJW|1|L5|A|3495

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_063 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4165

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZJW|1|L5|G|3489
7ZJW|1|L5|PSU|3490
7ZJW|1|L5|A|3491
7ZJW|1|L5|A2M|3492
7ZJW|1|L5|C|3493
7ZJW|1|L5|PSU|3494
7ZJW|1|L5|A|3495
7ZJW|1|L5|PSU|3496
7ZJW|1|L5|G|3497
7ZJW|1|L5|A|3498
7ZJW|1|L5|C|3499

Current chains

Chain L5

28S rRNA

Nearby chains

Chain F

Selenocysteine transfer RNA

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain S2

Small subunit ribosomal RNA; SSU rRNA