HL_7ZJW_064

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_064 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0931

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZJW|1|L5|U|3528
7ZJW|1|L5|C|3529
7ZJW|1|L5|U|3530
7ZJW|1|L5|A|3531
7ZJW|1|L5|A|3532
7ZJW|1|L5|U|3533
7ZJW|1|L5|U|3534
7ZJW|1|L5|A|3535
7ZJW|1|L5|G|3536

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA