HL_7ZJW_070

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

7ZJW|1|L5|A|3960, 7ZJW|1|L5|C|3967

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_070 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1085

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7ZJW|1|L5|U|3956
7ZJW|1|L5|C|3957
7ZJW|1|L5|A|3958
7ZJW|1|L5|A|3959
7ZJW|1|L5|A|3960
7ZJW|1|L5|C|3961
7ZJW|1|L5|G|3962
7ZJW|1|L5|G|3963
7ZJW|1|L5|U|3964
7ZJW|1|L5|A|3965
7ZJW|1|L5|6MZ|3966
7ZJW|1|L5|C|3967
7ZJW|1|L5|G|3968

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29