HL_7ZJW_076

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

7ZJW|1|L5|U|4165, 7ZJW|1|L5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_076 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.4161

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|C|4163
7ZJW|1|L5|G|4164
7ZJW|1|L5|U|4165
7ZJW|1|L5|PSU|4166
7ZJW|1|L5|C|4167
7ZJW|1|L5|A|4168
7ZJW|1|L5|PSU|4169
7ZJW|1|L5|A|4170
7ZJW|1|L5|G|4171

Current chains

Chain L5

28S rRNA

Nearby chains

Chain F

Selenocysteine transfer RNA

Chain LL

60S ribosomal protein L10

Chain Lp

60S ribosomal protein L40