HL_7ZJW_077

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_077 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1088

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7ZJW|1|L5|A|4220
7ZJW|1|L5|G|4221
7ZJW|1|L5|C|4222
7ZJW|1|L5|A|4223
7ZJW|1|L5|G|4224
7ZJW|1|L5|A|4225
7ZJW|1|L5|A|4226
7ZJW|1|L5|U|4227

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain Lp

60S ribosomal protein L40