HL_7ZJW_099

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7ZJW|1|S2|U|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJW_099 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.215

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZJW|1|S2|G|289
7ZJW|1|S2|G|290
7ZJW|1|S2|U|291
7ZJW|1|S2|G|292
7ZJW|1|S2|A|293
7ZJW|1|S2|C|294
7ZJW|1|S2|U|295
7ZJW|1|S2|C|296

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SR

40S ribosomal protein S6

Chain SW

40S ribosomal protein S11