HL_7ZJW_115
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7ZJW|1|S2|C|1058, 7ZJW|1|S2|U|1062
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_115 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.2153
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
7ZJW|1|S2|G|1055
7ZJW|1|S2|A|1056
7ZJW|1|S2|PSU|1057
7ZJW|1|S2|C|1058
7ZJW|1|S2|A|1059
7ZJW|1|S2|G|1060
7ZJW|1|S2|A|1061
7ZJW|1|S2|U|1062
7ZJW|1|S2|A|1063
7ZJW|1|S2|C|1064
7ZJW|1|S2|C|1065
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SF
- Ribosomal protein eS26
- Chain SZ
- 40S ribosomal protein uS11
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