HL_7ZJW_119
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7ZJW|1|S2|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZJW_119 not in the Motif Atlas
- Geometric match to HL_4V88_212
- Geometric discrepancy: 0.1132
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7ZJW|1|S2|G|1246
7ZJW|1|S2|A|1247
7ZJW|1|S2|C|1248
7ZJW|1|S2|U|1249
7ZJW|1|S2|C|1250
7ZJW|1|S2|A|1251
7ZJW|1|S2|A|1252
7ZJW|1|S2|C|1253
7ZJW|1|S2|A|1254
7ZJW|1|S2|C|1255
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain F
- Selenocysteine transfer RNA
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain SD
- 40S ribosomal protein S27a
- Chain SH
- 40S ribosomal protein uS14
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sf
- 40S ribosomal protein uS10
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