HL_7ZPQ_006
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GAUGAUUC
- Length
- 8 nucleotides
- Bulged bases
- 7ZPQ|1|2|U|249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZPQ_006 not in the Motif Atlas
- Homologous match to HL_4V88_191
- Geometric discrepancy: 0.1113
- The information below is about HL_4V88_191
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
7ZPQ|1|2|G|243
7ZPQ|1|2|A|244
7ZPQ|1|2|U|245
7ZPQ|1|2|G|246
7ZPQ|1|2|A|247
7ZPQ|1|2|U|248
7ZPQ|1|2|U|249
7ZPQ|1|2|C|250
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4-A
- Chain AL
- 40S ribosomal protein S11-A
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