HL_7ZPQ_028

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7ZPQ|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2992

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZPQ|1|2|A|1238
7ZPQ|1|2|U|1239
7ZPQ|1|2|U|1240
7ZPQ|1|2|G|1241
7ZPQ|1|2|A|1242
7ZPQ|1|2|G|1243
7ZPQ|1|2|A|1244
7ZPQ|1|2|G|1245
7ZPQ|1|2|C|1246
7ZPQ|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AP

RPS15 isoform 1

Chain Ad

RPS29A isoform 1

Chain Af

RPS31 isoform 1