HL_7ZPQ_030

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7ZPQ|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_030 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0978

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZPQ|1|2|C|1309
7ZPQ|1|2|U|1310
7ZPQ|1|2|U|1311
7ZPQ|1|2|A|1312
7ZPQ|1|2|A|1313
7ZPQ|1|2|U|1314
7ZPQ|1|2|U|1315
7ZPQ|1|2|G|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AR

40S ribosomal protein S17-B